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Gu S, Anderson I, Dr Victor Kunin, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. Bioinformatics 23:6p.764-6. January 17, 2007. PMID:17234642 We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly interface which provides a set of tools for users with or without SQL knowledge. The query results are projected onto a phylogenetic tree and can be displayed in multiple color groups. A rich set of browsing, grouping and query tools are provided to facilitate trait exploration, comparison and analysis. AVAILABILITY: The program, detailed tutorial and examples are available online (http:/genome.lbl.gov/vista/TreeQVista). You must log in to comment articles |
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